co-pymol

About co-pymol

co-pymol Drive PyMOL in plain English — from Codex, Claude Code, Cursor, or your phone. is a PyMOL plugin that turns PyMOL into an MCP server, so you can drive it in English from any MCP client (Codex, Claude Code, Cursor) instead of typing PyMOL commands by hand. On startup it spins up an MCP server — built on the official MCP Python SDK — inside PyMOL's own Python process, exposing the API as tools, so you can: Automate analysis and visualisation with an agent instead of doing it by hand Read confidence values (pLDDT / ipTM / pTM / PAE) on an agent's window via a gemmi-backed metrics layer...

Quick Facts

Stars	44
Forks	3
Language	Python
Category	MCP Server
License	MIT
Quality Score	66.6886455158272/100
Last Updated	2026-10-02
Created	2026-05-14
Platforms	claude-code, cli, codex, mcp, python
Est. Tokens	~15k

Compatible Skills

These tools work well together with co-pymol for enhanced workflows:

ai-plugin — semantic(0.24)+complementary+same_lang+similar_pop+shared_platform (58%)
ai-helpers — semantic(0.23)+complementary+same_lang+similar_pop+shared_platform (58%)
agentic-sop-to-work — semantic(0.17)+complementary+same_lang+similar_pop+shared_platform (56%)
ed3d-plugins — semantic(0.16)+complementary+same_lang+similar_pop+shared_platform (56%)
bundles-forge — semantic(0.15)+complementary+same_lang+similar_pop+shared_platform (55%)

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Frequently Asked Questions

What is co-pymol?

co-pymol is PyMOL plugin - drive PyMOL from Claude Code, Codex, Cursor, or any MCP client.. It is categorized as a MCP Server with 44 GitHub stars.

What programming language is co-pymol written in?

co-pymol is primarily written in Python.

How do I install or use co-pymol?

You can find installation instructions and usage details in the co-pymol GitHub repository at github.com/soo-jeongkim/co-pymol. The project has 44 stars and 3 forks, indicating an active community.

What license does co-pymol use?

co-pymol is released under the MIT license, making it free to use and modify according to the license terms.

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