CyteType

About CyteType

Multi-agent LLM driven cell type annotation for single-cell RNA-Seq data

agentic-ai anndata cell-state-prediction celltype-annotation celltype-identification disease-prediction llm llm-agent marker-genes rna-seq

Quick Facts

Stars	124
Forks	17
Language	Python
Category	Agent Tool
Quality Score	35.25/100
Open Issues	13
Last Updated	2026-04-14
Created	2025-04-27
Platforms	python
Est. Tokens	~83k

Compatible Skills

These tools work well together with CyteType for enhanced workflows:

LiteMultiAgent — semantic(0.21)+complementary+same_lang+similar_pop+shared_platform (52%)
TapeAgents — semantic(0.19)+complementary+same_lang+similar_pop+shared_platform (52%)
SecGPT — semantic(0.18)+complementary+same_lang+similar_pop+shared_platform (51%)
LLMafia — semantic(0.17)+complementary+same_lang+similar_pop+shared_platform (51%)
SimplerLLM — semantic(0.17)+complementary+same_lang+similar_pop+shared_platform (51%)

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Frequently Asked Questions

What is CyteType?

CyteType is Multi-agent LLM driven cell type annotation for single-cell RNA-Seq data. It is categorized as a Agent Tool with 124 GitHub stars.

What programming language is CyteType written in?

CyteType is primarily written in Python. It covers topics such as agentic-ai, anndata, cell-state-prediction.

How do I install or use CyteType?

You can find installation instructions and usage details in the CyteType GitHub repository at github.com/NygenAnalytics/CyteType. The project has 124 stars and 17 forks, indicating an active community.

View on GitHub → Browse Agent Tool tools